Publications

Found 164 results
2010
Mondal J, Zhu X, Cui Q., Yethiraj A..  2010.  Sequence-Dependent Interaction of beta-Peptides with Membranes. Journal of Physical Chemistry BJournal of Physical Chemistry B. 114:13585-13592.
Reddy G, Yethiraj A..  2010.  Solvent effects in polyelectrolyte adsorption: Computer simulations with explicit and implicit solvent. Journal of Chemical PhysicsJournal of Chemical Physics. 132
Sung BJune, Yethiraj A..  2010.  Structure of void space in polymer solutions. Physical Review EPhysical Review E. 81
2009
Ma L., Yethiraj A., Chen X., Cui Q..  2009.  A Computational Framework for Mechanical Response of Macromolecules: Application to the Salt Concentration Dependence of DNA Bendability. Biophysical JournalBiophysical Journal. 96:3543-3554.
Sung B.J, Yethiraj A..  2009.  Computer Simulations of Protein Diffusion in Compartmentalized Cell Membranes. Biophysical JournalBiophysical Journal. 97:472-479.
Kim J.S, Yethiraj A..  2009.  Effect of Macromolecular Crowding on Reaction Rates: A Computational and Theoretical Study. Biophysical JournalBiophysical Journal. 96:1333-1340.
Yethiraj A..  2009.  Liquid State Theory of Polyelectrolyte Solutions. Journal of Physical Chemistry BJournal of Physical Chemistry B. 113:1539-1551.
Tang Y., Chen X., Yoo J., Yethiraj A., Cui Q..  2009.  Numerical Simulation of Nanoindentation and Patch Clamp Experiments on Mechanosensitive Channels of Large Conductance in Escherichia coli. Experimental MechanicsExperimental Mechanics. 49:35-46.
Kim J.S, Damodaran S., Yethiraj A..  2009.  Retardation of Ice Crystallization by Short Peptides. Journal of Physical Chemistry AJournal of Physical Chemistry A. 113:4403-4407.
Mondal J., Sung B.J, Yethiraj A..  2009.  Sequence-Directed Organization of beta-Peptides in Self-Assembled Monolayers. Journal of Physical Chemistry BJournal of Physical Chemistry B. 113:9379-9385.
Sung B.J, Chang R.W, Yethiraj A..  2009.  Swelling of polymers in porous media. Journal of Chemical PhysicsJournal of Chemical Physics. 130
2008
Pizzey CL, Pomerantz WC, Sung B-J, Yuwono VM, Gellman S.H, Hartgerink JD, Yethiraj A., Abbott NL.  2008.  Characterization of nanofibers formed by self-assembly of β-peptide oligomers using small angle x-ray scattering. Journal of Chemical PhysicsJournal of Chemical Physics. 129:095103/1-095103/8.
Kim JSoo, Yethiraj A..  2008.  A diffusive anomaly of water in aqueous sodium chloride solutions at low temperatures. Journal of Physical Chemistry BJournal of Physical Chemistry B. 112:1729-1735.
Sung BJune, Yethiraj A..  2008.  The effect of matrix structure on the diffusion of fluids in porous media. Journal of Chemical PhysicsJournal of Chemical Physics. 128
Kim J.S, Yethiraj A..  2008.  The effect of salt on the melting of ice: A molecular dynamics simulation study. Journal of Chemical PhysicsJournal of Chemical Physics. 129
Zhu X, Koenig P, Gellman S.H, Yethiraj A., Cui Q..  2008.  Establishing Effective Simulation Protocols for β- and α/β-Peptides. II. Molecular Mechanical (MM) Model for a Cyclic β-Residue. Journal of Physical Chemistry BJournal of Physical Chemistry B. 112:5439-5448.
Chen X, Cui Q., Tang Y, Yoo J, Yethiraj A..  2008.  Gating mechanisms of mechanosensitive channels of large conductance, I: A continuum mechanics-based hierarchical framework. Biophysical JournalBiophysical Journal. 95:563-580.
Tang Y, Yoo J, Yethiraj A., Cui Q., Chen X.  2008.  Gating mechanisms of mechanosensitive channels of large conductance, II: Systematic study of conformational transitions. Biophysical JournalBiophysical Journal. 95:581-596.
Sung BJune, Yethiraj A..  2008.  Lateral diffusion of proteins in the plasma membrane: Spatial tessellation and percolation theory. Journal of Physical Chemistry BJournal of Physical Chemistry B. 112:143-149.
Tang Y.Y, Yoo J., Yethiraj A., Cui Q., Chen X..  2008.  Mechanosensitive channels: Insights from continuum-based simulations. Cell Biochemistry and BiophysicsCell Biochemistry and Biophysics. 52:1-18.
Padmanabhan V, Kumar SK, Yethiraj A..  2008.  Phase behavior of semiflexible polymer chains. Journal of Chemical PhysicsJournal of Chemical Physics. 128
Chang W-S, Link S, Yethiraj A., Barbara PF.  2008.  Single molecule spectroscopy of conjugated polymer chains in an electric field-aligned liquid crystal. Journal of Physical Chemistry BJournal of Physical Chemistry B. 112:448-453.
2007
Zhu X, Yethiraj A., Cui Q..  2007.  Establishing effective simulation protocols for beta- and alpha/beta-mixed peptides. I. QM and QM/MM models. Journal of Chemical Theory and ComputationJournal of Chemical Theory and Computation. 3:1538-1549.
Moorthy J, Burgess R, Yethiraj A., Beebe D.  2007.  Microfluidic based platform for characterization of protein interactions in hydrogel nanoenvironments. Analytical ChemistryAnalytical Chemistry. 79:5322-5327.
Sung BJune, Yethiraj A..  2007.  Permeation of a hard sphere fluid into a quenched matrix. Journal of Chemical PhysicsJournal of Chemical Physics. 126

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